42133 CHD
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
42133 chr_12 CHD 755319 757130 - CHD

Synonyms

NCBI ID Ensembl Genomes exon ID
7447992 Thaps42133.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0436

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0018
 0.42

Most Highly Correlated Transcripts

261324

PLN02724
0.894

25187

PI3Kc_like superfamily
0.8795

33759

HECTc
0.8785

5875

hypothetical protein
0.8751

2443

hypothetical protein
0.8746

28004

hypothetical protein
0.8738

37609

PKc_like superfamily
0.8708

267979

HCO3_cotransp superfamily
0.8695

269997

COG1112
0.8693

21568

hypothetical protein
0.8673

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CHD cyclase homology domain; Catalytic domains of the mononucleotidyl cyclases (MNC's), also... cl11967 87.6346 5.04E-20 197 - 425 specific 143636
Nucleotidyl_cyc_III superfamily Class III nucleotidyl cyclases; Class III nucleotidyl cyclases are the largest, most diverse group... - 87.6346 5.04E-20 197 - 425 superfamily 264492

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre06.g300500.t1.1 Not available 316130

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0007242 GO:0009190 GO:0016849 -

GO:0007242

NA

Details: 
NA
GO Category: 
NA

GO:0009190

cyclic nucleotide biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue.
GO Category: 
BP

GO:0016849

phosphorus-oxygen lyase activity

Details: 
Catalysis of the cleavage of a phosphorus-oxygen bond by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond.
GO Category: 
MF

Add comment

Log in to post comments