42687 COPIIcoated_ERV
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
42687 chr_17 COPIIcoated_ERV 475743 477708 - COPIIcoated_ERV

Synonyms

NCBI ID Ensembl Genomes exon ID
7442140 Thaps42687.2, Thaps42687.1, Thaps42687.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0331

Most Highly Correlated Transcripts

bd877

(bd877) NA
0.9402

bd690

(bd690) NA
0.9393

bd1840

(bd1840) NA
0.9324

bd643

(bd643) NA
0.932

bd1934

(bd1934) NA
0.8976

bd415

(bd415) arom_aa_hydroxylase superfamily
0.8736

bd738

(bd738) NA
0.8673

bd1801

(bd1801) NA
0.8647

bd1756

(bd1756) NA
0.8637

bd737

(bd737) NA
0.8616

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
COPIIcoated_ERV superfamily Endoplasmic reticulum vesicle transporter; This family is conserved from plants and fungi to humans... - 204.841 8.49E-63 219 - 442 superfamily 254553
COPIIcoated_ERV superfamily Endoplasmic reticulum vesicle transporter; This family is conserved from plants and fungi to humans... - 204.841 8.49E-63 219 - 442 superfamily 254553
ERGIC_N superfamily Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC); This family is the N-terminal of... - 136.082 1.13E-38 73 - 170 superfamily 258122
ERGIC_N superfamily Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC); This family is the N-terminal of... - 136.082 1.13E-38 73 - 170 superfamily 258122

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
261472 PHATRDRAFT_17166 PHATRDRAFT_17166 277413 152914 430522 Not available Not available 328225

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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