4315 (Tp_HSF_1.2b) HSF_DNA-bind
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
4315 chr_4 (Tp_HSF_1.2b) HSF_DNA-bind 737668 739040 - HSF_DNA-bind

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0129

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0008
 0.44

Most Highly Correlated Transcripts

bd643

(bd643) NA
0.8559

32176

GABARAP
0.8443

28413

BglB superfamily
0.8368

bd415

(bd415) arom_aa_hydroxylase superfamily
0.7992

bd1806

(bd1806) AAT_I superfamily
0.7966

bd1934

(bd1934) NA
0.7961

25565

hypothetical protein
0.7938

bd877

(bd877) NA
0.7922

5080

hypothetical protein
0.7873

21753

hypothetical protein
0.7865

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HSF_DNA-bind HSF-type DNA-binding; HSF-type DNA-binding. cl12113 120.297 1.16E-33 108 - 214 specific 249865
HSF_DNA-bind superfamily HSF-type DNA-binding; HSF-type DNA-binding. - 120.297 1.16E-33 108 - 214 superfamily 264552

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_33622 PHATR_33622 200749 65254 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 GO:0003677 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

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