43160 (TPS1) TrpRS_core
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
43160 chr_24 (TPS1) TrpRS_core 254500 255856 + TrpRS_core

Synonyms

NCBI ID Ensembl Genomes exon ID
7452029 Thaps43160.3, Thaps43160.2, Thaps43160.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0272

Most Highly Correlated Transcripts

25142

SWIRM
0.9006

261324

PLN02724
0.8966

22303

hypothetical protein
0.8955

28004

hypothetical protein
0.895

2897

NGN_Euk
0.8946

40200

TRX_reduct
0.8886

264548

FusA
0.8883

25270

hypothetical protein
0.8874

268118

WD40
0.8847

38475

HA2
0.8836

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase; Tryptophanyl-tRNA synthetase (TrpRS)... cl00015 272.535 9.32E-89 76 - 376 specific 173903
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 272.535 9.32E-89 76 - 376 superfamily 260139

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_40901 PHATRDRAFT_40901 268525 253989 455075 Cre12.g522350.t1.2 AT3G04600.3 498780

KEGG

KEGG description KEGG Pathway
Aminoacyl-tRNA biosynthesis map00970

GO Terms

GO:0004812 GO:0005524 GO:0006418 GO:0004830 GO:0006436 -

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0004830

tryptophan-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-tryptophan + tRNA(Trp) = AMP + diphosphate + L-tryptophanyl-tRNA(Trp).
GO Category: 
MF

GO:0006436

tryptophanyl-tRNA aminoacylation

Details: 
The process of coupling tryptophan to tryptophanyl-tRNA, catalyzed by tryptophanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

Add comment

Log in to post comments