4402 RotamaseThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
4402	chr_4	Rotamase	933262	933727	+	Rotamase

Synonyms

NCBI ID	Ensembl Genomes exon ID
7453349	Thaps4402.1, Thaps4402.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0013

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0042	0.43

Most Highly Correlated Transcripts

5812 hypothetical protein 0.9065	2832 hypothetical protein 0.9063	26991 GRX_GRXh_1_2_like 0.8982	19977 TRX_family 0.8881	35624 Glo_EDI_BRP_like_18 0.8857	33466 Sm_multidrug_ex 0.8824
5314 hypothetical protein 0.8811	4578 hypothetical protein 0.8767	33919 MPC superfamily 0.876	10677 hypothetical protein 0.8753

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Rotamase		PPIC-type PPIASE domain; Rotamases increase the rate of protein folding by catalyzing the...	cl08278	87.3388	2.93E-23	24 - 113	specific	250020
Rotamase_2 superfamily		PPIC-type PPIASE domain; PPIC-type PPIASE domain.	-	87.3388	2.93E-23	24 - 113	superfamily	263564
SurA		Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover,...	-	83.9778	1.22E-20	7 - 115	multi-dom	223831

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
27550	PHATRDRAFT_8365	PHATRDRAFT_8365	Not available	Not available	109596	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0016853 GO:0003755 GO:0004600 GO:0030051 GO:0042027 -

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