33466 Sm_multidrug_exThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
33466	chr_4	Sm_multidrug_ex	1409560	1410138	-	Sm_multidrug_ex

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448824	Thaps33466.2, Thaps33466.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0025

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0182	0.48	0.011 8

Most Highly Correlated Transcripts

3768 hypothetical protein 0.924	36641 Aldolase_Class_I superfamily 0.9079	19058 CTP_transf_1 superfamily 0.9015	33919 MPC superfamily 0.8949	268526 hypothetical protein 0.8926	16075 tpt 0.8868
36649 SufE superfamily 0.8838	4402 Rotamase 0.8824	3756 hypothetical protein 0.8809	37970 Mito_carr 0.8767

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Sm_multidrug_ex		Putative small multi-drug export protein; This family contains a small number of putative small...	cl01024	101.808	5.95E-28	12 - 128	specific	253867
Sm_multidrug_ex superfamily		Putative small multi-drug export protein; This family contains a small number of putative small...	-	101.808	5.95E-28	12 - 128	superfamily	260751

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_7237	PHATRDRAFT_7237	186263	98459	Not available	Not available	AT2G02590.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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