4470 (Tp_CXC2) TCR
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
4470 chr_4 (Tp_CXC2) TCR 1108985 1111286 - TCR

Synonyms

NCBI ID Ensembl Genomes exon ID
7453385 Thaps4470.1, Thaps4470.2, Thaps4470.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0441

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0024
 0.39

Most Highly Correlated Transcripts

bd463

(bd463) Aa_trans superfamily
0.9284

bd1893

(bd1893) NA
0.9046

bd846

(bd846) NA
0.8948

bd1078

(bd1078) NA
0.8945

bd758

(bd758) NA
0.8861

5734

hypothetical protein
0.8849

4551

hypothetical protein
0.8698

bd1662

(bd1662) TIGR00367
0.8655

bd760

(bd760) ZnMc superfamily
0.8625

bd843

(bd843) NA
0.8618

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TCR superfamily Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two... - 71.9078 1.55E-15 338 - 373 superfamily 202712
TCR superfamily Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two... - 71.9078 1.55E-15 338 - 373 superfamily 202712
TCR superfamily Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two... - 71.9078 1.55E-15 338 - 373 superfamily 202712
TCR superfamily Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two... - 71.9078 1.55E-15 338 - 373 superfamily 202712

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 201761 184616 Not available Not available Not available 520155

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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