4501 EMP24_GP25LThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
4501	chr_4	EMP24_GP25L	1192855	1193753	+	EMP24_GP25L

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446091	Thaps4501.2, Thaps4501.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0100

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0121	0.36	0.06 0.000047

Most Highly Correlated Transcripts

3265 zf-C3HC superfamily 0.8972	1819 hypothetical protein 0.8961	269624 TIM_phosphate_binding superfamily 0.8944	13448 Sec1 0.8929	262193 FHA 0.8869	38157 (FCT1) GDP-L-fucose transporter 0.885
7696 2_5_RNA_ligase2 0.883	2312 hypothetical protein 0.8826	261863 GlcNAc superfamily 0.8818	6093 hypothetical protein 0.8804

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
EMP24_GP25L superfamily		emp24/gp25L/p24 family/GOLD; Members of this family are implicated in bringing cargo forward from...	-	68.062	2.00E-14	49 - 237	superfamily	250365
EMP24_GP25L superfamily		emp24/gp25L/p24 family/GOLD; Members of this family are implicated in bringing cargo forward from...	-	68.062	2.00E-14	49 - 237	superfamily	250365

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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