4867 SBF superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
4867 chr_4 SBF superfamily 2125475 2127187 + SBF superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7452231 Thaps4867.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0132

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0040
 0.39

Most Highly Correlated Transcripts

8415

P4Hc
0.9052

6698

hypothetical protein
0.8958

3310

hypothetical protein
0.8948

6889

hypothetical protein
0.8943

950

hypothetical protein
0.8846

1118

hypothetical protein
0.8828

6233

DUF4239
0.8783

6087

hypothetical protein
0.8767

25509

hypothetical protein
0.8749

9174

DUF563
0.8705

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SBF superfamily Sodium Bile acid symporter family; This family consists of Na+/bile acid co-transporters. These... - 116.666 3.12E-29 36 - 343 superfamily 267570

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49978 PHATRDRAFT_49978 Not available 250732 120638 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006814 GO:0008508 GO:0016020 -

GO:0006814

sodium ion transport

Details: 
The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0008508

bile acid:sodium symporter activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: bile acid(out) + Na+(out) = bile acid(in) + Na+(in).
GO Category: 
MF

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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