4981 Rhomboid superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
4981	chr_5	Rhomboid superfamily	77106	78050	+	Rhomboid superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447241	Thaps4981.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0206

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0172	0.30	0.000047 3000

Most Highly Correlated Transcripts

4108 hypothetical protein 0.9587	24965 hypothetical protein 0.8551	9467 hypothetical protein 0.8523	9065 hypothetical protein 0.8501	14192 PLN02449 0.8456	31829 CBS_like 0.8425
8065 hypothetical protein 0.8398	36459 PLN02584 0.8391	6504 CDP-OH_P_transf superfamily 0.8363	36037 Trypsin_2 0.8351

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Rhomboid superfamily		Rhomboid family; This family contains integral membrane proteins that are related to Drosophila...	-	73.0262	4.11E-16	139 - 284	superfamily	264372

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_35318	PHATRDRAFT_35318	240536	214393	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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