5283 ABC_ATPase superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5283 chr_5 ABC_ATPase superfamily 796321 799316 - ABC_ATPase superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7446440 Thaps5283.2, Thaps5283.1, Thaps5283.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0036

Most Highly Correlated Transcripts

16295

FBPase
0.8858

10903

hypothetical protein
0.8748

21220

KU superfamily
0.8741

12899

AAA
0.8718

10248

hypothetical protein
0.8665

21996

hypothetical protein
0.865

13448

Sec1
0.8627

264556

FBPase
0.8607

4666

hypothetical protein
0.8582

24525

hypothetical protein
0.8538

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 152.787 7.41E-42 494 - 694 superfamily 266551

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 69549 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003684 GO:0005524 GO:0006298 -

GO:0003684

damaged DNA binding

Details: 
Interacting selectively and non-covalently with damaged DNA.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006298

mismatch repair

Details: 
A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
GO Category: 
BP

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