5288 DUF393 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
5288	chr_5	DUF393 superfamily	807065	808220	-	DUF393 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446442	Thaps5288.3, Thaps5288.2, Thaps5288.4, Thaps5288.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0031

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0130	0.40	0.00008 4.1

Most Highly Correlated Transcripts

20405 GRX_GRXh_1_2_like 0.8594	8872 hypothetical protein 0.8564	38602 Ndh 0.8508	7085 PI-PLCc_GDPD_SF superfamily 0.8472	3146 hypothetical protein 0.844	3914 hypothetical protein 0.844
3426 zf-DNL superfamily 0.8422	9023 hypothetical protein 0.8409	4876 hypothetical protein 0.8408	3577 hypothetical protein 0.8398

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DUF393 superfamily		Protein of unknown function, DUF393; Members of this family have two highly conserved cysteine...	-	82.021	1.36E-19	155 - 261	superfamily	260807

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
35584		Not available	190184	109775	104634	Cre14.g622750.t1.1	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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