547 PRK11856
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
547 chr_6 PRK11856 1514854 1516363 - PRK11856

Synonyms

NCBI ID Ensembl Genomes exon ID
7442750 Thaps547.3, Thaps547.1, Thaps547.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0015

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0201
 0.23

Most Highly Correlated Transcripts

bd1306

(bd1306) NA
0.9806

bd1820

(bd1820) Fasciclin
0.9694

bd218

(bd218) Chloroa_b-bind superfamily
0.9681

bd1403

(bd1403) NA
0.9674

bd1387

(bd1387) psbE
0.9643

bd1645

(bd1645) tpt
0.9642

bd1342

(bd1342) psaL
0.9598

bd1304

(bd1304) Ycf4
0.9598

bd1863

(bd1863) NA
0.9585

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9544

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-... cl11404 100.171 4.68E-26 1 - 70 specific 133458
Biotinyl_lipoyl_domains superfamily Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the... - 100.171 4.68E-26 1 - 70 superfamily 264355
2-oxoacid_dh superfamily 2-oxoacid dehydrogenases acyltransferase (catalytic domain); These proteins contain one to three... - 173.121 3.48E-51 221 - 426 superfamily 249671
2-oxoacid_dh superfamily 2-oxoacid dehydrogenases acyltransferase (catalytic domain); These proteins contain one to three... - 173.121 3.48E-51 221 - 426 superfamily 249671
E3_binding superfamily e3 binding domain; This family represents a small domain of the E2 subunit of 2-oxo-acid... - 64.3673 2.18E-13 126 - 164 superfamily 251550
E3_binding superfamily e3 binding domain; This family represents a small domain of the E2 subunit of 2-oxo-acid... - 64.3673 2.18E-13 126 - 164 superfamily 251550
PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed - 335.222 5.54E-111 1 - 426 multi-dom 237001

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd1828 PHATRDRAFT_bd1828 166615 180577 448908 Not available AT1G34430.1 Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0008152 GO:0008415 GO:0005515 GO:0004742 GO:0009351 GO:0030523 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0008415

NA

Details: 
NA
GO Category: 
NA

GO:0005515

protein binding

Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO Category: 
MF

GO:0004742

dihydrolipoyllysine-residue acetyltransferase activity

Details: 
Catalysis of the reaction: acetyl-CoA + dihydrolipoamide = CoA + S-acetyldihydrolipoamide.
GO Category: 
MF

GO:0009351

NA

Details: 
NA
GO Category: 
NA

GO:0030523

dihydrolipoamide S-acyltransferase activity

Details: 
Catalysis of the reaction: acyl-CoA + dihydrolipoamide = CoA + S-acyldihydrolipoamide.
GO Category: 
MF

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