5533 Chloroa_b-bind
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5533 chr_5 Chloroa_b-bind 1446340 1447035 - Chloroa_b-bind

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps5533.1, Thaps5533.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0054

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0112
 0.40

Most Highly Correlated Transcripts

5533

Chloroa_b-bind
1

270374

hypothetical protein
0.9092

bd837

(bd837) NA
0.8273

270386

hypothetical protein
0.8218

21813

hypothetical protein
0.8154

20607

hypothetical protein
0.8131

2735

hypothetical protein
0.8014

270213

(Hlip2) high light induced protein 2
0.7997

bd1037

(bd1037) Ycf66_N
0.7981

ThpsCp006

(ycf66) hypothetical protein
0.7981

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Chloroa_b-bind Chlorophyll A-B binding protein; Chlorophyll A-B binding protein. cl02879 119.334 6.83E-34 59 - 193 specific 249913
Chloroa_b-bind superfamily Chlorophyll A-B binding protein; Chlorophyll A-B binding protein. - 119.334 6.83E-34 59 - 193 superfamily 261492

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 271659 257821 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0009765 GO:0016020 -

GO:0009765

photosynthesis, light harvesting

Details: 
Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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