5555 PAP_fibrillin superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
5555	chr_5	PAP_fibrillin superfamily	1497815	1498606	+	PAP_fibrillin superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448149	Thaps5555.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0021

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0092	0.42	0.2 0.0004

Most Highly Correlated Transcripts

4108 hypothetical protein 0.9704	32153 (HDP1) PLN02875 0.8713	7740 hypothetical protein 0.8688	268592 VDE superfamily 0.861	915 hypothetical protein 0.86	28125 PLN00203 0.8588
20405 GRX_GRXh_1_2_like 0.8466	3845 hypothetical protein 0.8442	574 PRK05444 0.8427	4465 hypothetical protein 0.8413

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PAP_fibrillin superfamily		PAP_fibrillin; This family identifies a conserved region found in a number of plastid lipid-...	-	81.3934	7.29E-19	47 - 260	superfamily	252780

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_44977	PHATRDRAFT_44977	181019	102729	238400	Cre03.g176350.t1.2	AT1G51110.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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