32153 (HDP1) PLN02875Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
32153	chr_2	(HDP1) PLN02875	872795	874606	+	PLN02875

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450240	Thaps32153.1, Thaps32153.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0021

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0092	0.42	0.2 0.0004

Most Highly Correlated Transcripts

bd760 (bd760) ZnMc superfamily 0.901	bd1983 (bd1983) RecA-like_NTPases superfamily 0.8889	38608 SDR_a5 0.8866	bd950 (bd950) NA 0.8808	3845 hypothetical protein 0.8802	bd211 (bd211) Maf_Ham1 superfamily 0.8755
5555 PAP_fibrillin superfamily 0.8713	1875 hypothetical protein 0.8682	8311 hypothetical protein 0.8672	38022 PLN02873 0.8661

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HPPD_C_like		C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS...	cl14632	256.326	1.33E-81	344 - 569	specific	176673
Glo_EDI_BRP_like superfamily		This domain superfamily is found in a variety of structurally related metalloproteins, including...	-	82.5778	1.32E-18	159 - 312	superfamily	265436
Glo_EDI_BRP_like superfamily		This domain superfamily is found in a variety of structurally related metalloproteins, including...	-	82.5778	1.32E-18	159 - 312	superfamily	265436
PLN02875		4-hydroxyphenylpyruvate dioxygenase	-	692.957	0	159 - 576	multi-dom	215472

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	185578	258990	Not available	Cre09.g399030.t1.1	AT1G06570.1	539872

KEGG

KEGG description	KEGG Pathway
Metabolic pathways	map01100

GO Terms

GO:0003868 GO:0009072 -

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