5574 SufI
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5574 chr_5 SufI 1547779 1553568 - SufI

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0246

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0015
 0.38

Most Highly Correlated Transcripts

25811

hypothetical protein
0.9082

25297

Chorein_N
0.9008

5780

hypothetical protein
0.8864

22922

hypothetical protein
0.8859

7695

SPRY_RanBP_like
0.8804

5743

BTB
0.8766

263610

COG3899
0.8761

5788

TFIIS_M
0.8696

1479

Alpha_kinase
0.8648

24409

hypothetical protein
0.863

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CuRO_1_LCC_like Cupredoxin domain 1 of laccase-like multicopper oxidases; including laccase, CueO, spore coat... cl19115 109.298 3.70E-27 594 - 693 specific 259869
Cupredoxin superfamily Cupredoxin superfamily; Cupredoxins contain type I copper centers and are involved in inter-... - 78.1052 5.57E-16 1016 - 1116 superfamily 267468
CuRO_2_LCC_like Cupredoxin domain 2 of laccase-like multicopper oxidases; including laccase, CueO, spore coat... cl19115 87.4138 3.12E-19 768 - 873 specific 259868
Cupredoxin superfamily Cupredoxin superfamily; Cupredoxins contain type I copper centers and are involved in inter-... - 78.1052 5.57E-16 1016 - 1116 superfamily 267468
Cupredoxin superfamily Cupredoxin superfamily; Cupredoxins contain type I copper centers and are involved in inter-... - 78.1052 5.57E-16 1016 - 1116 superfamily 267468
Patatin_and_cPLA2 superfamily Patatins and Phospholipases; Patatin-like phospholipase. This family consists of various patatin... - 76.9932 2.70E-15 106 - 266 superfamily 264349
SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism] - 126.828 1.33E-30 547 - 1116 multi-dom 225043

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_32902 PHATRDRAFT_32902 142454 264760 447728 Cre10.g431350.t1.1 AT4G39830.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005507 GO:0003824 GO:0045735 -

GO:0005507

copper ion binding

Details: 
Interacting selectively and non-covalently with copper (Cu) ions.
GO Category: 
MF

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0045735

nutrient reservoir activity

Details: 
Functions in the storage of nutritious substrates.
GO Category: 
MF

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