5788 TFIIS_M
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5788 chr_5 TFIIS_M 2127136 2134927 - TFIIS_M

Synonyms

NCBI ID Ensembl Genomes exon ID
7442295 Thaps5788.4, Thaps5788.5, Thaps5788.2, Thaps5788.3, Thaps5788.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0379

Most Highly Correlated Transcripts

24035

Peptidase_C19 superfamily
0.9321

24216

hypothetical protein
0.9271

22922

hypothetical protein
0.927

6400

hypothetical protein
0.9244

23971

zf-UBR
0.9205

263610

COG3899
0.9178

5780

hypothetical protein
0.9166

11261

WD40 superfamily
0.9102

24063

COG3899
0.9069

26140

PRP8
0.9063

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TFIIS_M Transcription factor S-II (TFIIS), central domain; Transcription elongation by RNA polymerase II is... cl02637 108.096 1.27E-26 2029 - 2152 specific 254240
TFIIS_M superfamily Transcription factor S-II (TFIIS), central domain; Transcription elongation by RNA polymerase II is... - 108.096 1.27E-26 2029 - 2152 superfamily 261385

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43029 PHATRDRAFT_43029 261430 297229 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006350 GO:0004339 -

GO:0006350

NA

Details: 
NA
GO Category: 
NA

GO:0004339

glucan 1,4-alpha-glucosidase activity

Details: 
Catalysis of the hydrolysis of terminal (1->4)-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose.
GO Category: 
MF

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