5605 RbsKThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
5605	chr_5	RbsK	1622881	1624210	-	RbsK

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448172	Thaps5605.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0100

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0182	0.48	0.011 8

Most Highly Correlated Transcripts

16295 FBPase 0.8988	261169 0.8681	7617 hypothetical protein 0.8574	23725 Rubis-subs-bind superfamily 0.8506	2505 Peptidase_C14 0.8477	7004 hypothetical protein 0.8458
4182 DUF3633 superfamily 0.8446	19764 MPC superfamily 0.8361	5717 (Tp_CBF/NF2) H4 superfamily 0.8339	bd793 (bd793) NA 0.8311

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RbsK		Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]	cl00192	83.6999	2.87E-18	39 - 411	specific	223598
ribokinase_pfkB_like superfamily		ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including...	-	83.6999	2.87E-18	39 - 411	superfamily	260247

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
17735		Not available	212304	319044	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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