5793 ENDO3c superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5793 chr_5 ENDO3c superfamily 2143175 2143758 - ENDO3c superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7444916 Thaps5793.2, Thaps5793.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0065

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0027
 0.38

Most Highly Correlated Transcripts

bd1095

(bd1095) NA
0.8702

bd466

(bd466) cytochrome_b_C
0.8698

bd467

(bd467) Cytochrome_b_N
0.8676

bd2088

(bd2088) rbcL
0.867

bd1342

(bd1342) psaL
0.8531

bd1645

(bd1645) tpt
0.8427

bd1094

(bd1094) FH2 superfamily
0.8381

bd1304

(bd1304) Ycf4
0.8281

bd2073

(bd2073) psbB
0.8275

bd1092

(bd1092) NA
0.8215

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ENDO3c superfamily endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase... - 99.2954 2.77E-27 84 - 159 superfamily 267419

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0009654 GO:0019898 GO:0042549 -

GO:0009654

photosystem II oxygen evolving complex

Details: 
A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ).
GO Category: 
CC

GO:0019898

extrinsic component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
GO Category: 
CC

GO:0042549

photosystem II stabilization

Details: 
The stabilization of the photosystem II protein complex, resulting from the phosphorylation of its structural protein subunits, in a cell actively involved in photosynthesis.
GO Category: 
BP

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