5805 ENDO3c superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
5805	chr_5	ENDO3c superfamily	2178015	2178849	+	ENDO3c superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444923	Thaps5805.2, Thaps5805.4, Thaps5805.1, Thaps5805.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0234

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0003	0.47	11000 2

Most Highly Correlated Transcripts

bd1487 (bd1487) PLN02688 0.8071	bd539 (bd539) Dynein_light superfamily 0.7327	5852 hypothetical protein 0.7218	2042 hypothetical protein 0.7177	3981 hypothetical protein 0.7069	9258 HP_PGM_like 0.702
bd1885 (bd1885) NA 0.7003	31085 Aa_trans superfamily 0.6978	6576 hypothetical protein 0.6812	9963 ATS1 0.679

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
ENDO3c superfamily		endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase...	-	94.2878	7.67E-25	114 - 200	superfamily	267419

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	164440	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments