5830 DUF3054Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
5830	chr_5	DUF3054	2255037	2255679	-	DUF3054

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447218	Thaps5830.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0009

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0117	0.49	7400 44000

Most Highly Correlated Transcripts

262767 LRR_RI superfamily 0.8204	3071 NA 0.8062	2733 hypothetical protein 0.8023	882 hypothetical protein 0.8016	5623 COG0637 0.7995	25944 p450 superfamily 0.7949
10396 PLN02172 0.7947	22822 NTF2 0.7941	35116 SF3b10 0.7936	11503 hypothetical protein 0.793

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DUF3054 superfamily		Protein of unknown function (DUF3054); Some members in this family of proteins are annotated as...	-	80.8376	1.08E-19	87 - 201	superfamily	256379
DUF3054 superfamily		Protein of unknown function (DUF3054); Some members in this family of proteins are annotated as...	-	80.8376	1.08E-19	87 - 201	superfamily	256379

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_45766	PHATRDRAFT_45766	222796	300497	117887	Cre13.g569250.t1.2	AT1G44920.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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