5896 RNase_T2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5896 chr_6 RNase_T2 189286 191763 + RNase_T2

Synonyms

NCBI ID Ensembl Genomes exon ID
7448378 Thaps5896.1, Thaps5896.3, Thaps5896.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0084

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0016
 0.55

Most Highly Correlated Transcripts

269624

TIM_phosphate_binding superfamily
0.8823

37118

FeThRed_B
0.8605

16114

PLN02350
0.8362

bd1749

(bd1749) NA
0.8347

33353

TRX_family
0.8209

37585

MECDP_synthase
0.813

780

Glf
0.8087

37377

AOX
0.8066

25163

hypothetical protein
0.8064

39802

Peptidase_C19 superfamily
0.8045

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNase_T2 Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism... cl00208 133.35 1.67E-35 98 - 293 specific 238220
RNase_T2 superfamily Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism... - 133.35 1.67E-35 98 - 293 superfamily 260262
Pho88 superfamily Phosphate transport (Pho88); Members of this family of proteins are involved in regulating... - 122.846 7.57E-32 465 - 639 superfamily 261182

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 284554 194205 Cre06.g306550.t1.1 AT2G39780.1 354681

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0004521 GO:0005509 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0004521

endoribonuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within ribonucleic acid by creating internal breaks.
GO Category: 
MF

GO:0005509

calcium ion binding

Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
MF

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