5992 TPDThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
5992	chr_6	TPD	422828	423938	-	TPD

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451159	Thaps5992.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0238

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0119	0.42	8.5 8.5

Most Highly Correlated Transcripts

268443 SAICAR_synt_Sc 0.8574	8776 Methyltransf_16 superfamily 0.8542	plastid_psb28 0.8527	6711 hypothetical protein 0.8453	bd168 (bd168) Peptidase_S9 superfamily 0.8444	bd974 (bd974) DUF751 0.8377
1083 MATE_eukaryotic 0.8303	31242 PtrB 0.8288	6389 PDCD2_C superfamily 0.8287	4853 hypothetical protein 0.8273

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TPD superfamily		Protein of unknown function TPD sequence-motif; This is a family of eukaryotic proteins of unknown...	-	148.919	2.08E-43	221 - 361	superfamily	258948
TPD superfamily		Protein of unknown function TPD sequence-motif; This is a family of eukaryotic proteins of unknown...	-	148.919	2.08E-43	221 - 361	superfamily	258948

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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