6522 Sm_F
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
6522 chr_6 Sm_F 1791191 1791541 + Sm_F

Synonyms

NCBI ID Ensembl Genomes exon ID
7444602 Thaps6522.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0270

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0041
 0.50

Most Highly Correlated Transcripts

plastid_psb28

0.8669

37118

FeThRed_B
0.8372

268443

SAICAR_synt_Sc
0.8304

9108

PRP3 superfamily
0.8296

4599

hypothetical protein
0.826

24451

TFIIS_I superfamily
0.8247

40200

TRX_reduct
0.8227

8937

hypothetical protein
0.8225

21137

hypothetical protein
0.8219

32795

Arl2
0.8211

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sm_F Sm protein F; The eukaryotic Sm proteins (B/B', D1, D2, D3, E, F and G) assemble into a... cl00259 146.974 9.30E-47 35 - 103 specific 212469
Sm_like superfamily Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form... - 146.974 9.30E-47 35 - 103 superfamily 260307

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_20167 PHATRDRAFT_20167 272635 294113 317040 Cre05.g241300.t1.2 AT4G30220.1 316641

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0005634 GO:0005732 GO:0006397 GO:0030529 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0005732

small nucleolar ribonucleoprotein complex

Details: 
A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type.
GO Category: 
CC

GO:0006397

mRNA processing

Details: 
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO Category: 
BP

GO:0030529

ribonucleoprotein complex

Details: 
A macromolecular complex containing both protein and RNA molecules.
GO Category: 
CC

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