6600 Sm_D1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
6600 chr_6 Sm_D1 2004124 2004619 + Sm_D1

Synonyms

NCBI ID Ensembl Genomes exon ID
7446568 Thaps6600.1, Thaps6600.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0426

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0107
 0.36

Most Highly Correlated Transcripts

bd663

(bd663) NA
0.7732

37430

Sm_D2
0.7287

7903

hypothetical protein
0.7156

23946

hypothetical protein
0.715

38335

(PSB3) proteasome_beta_type_3
0.7117

10946

CwfJ_C_1 superfamily
0.6805

35084

IF4E
0.6786

11101

TauE
0.6731

24068

SNARE component
0.6694

37485

Abhydrolase_5
0.6655

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sm_D1 Sm protein D1; The eukaryotic Sm proteins (B/B', D1, D2, D3, E, F and G) assemble into a... cl00259 149.683 1.53E-47 2 - 92 specific 212471
Sm_like superfamily Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form... - 149.683 1.53E-47 2 - 92 superfamily 260307

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51100 PHATRDRAFT_51100 257270 225265 452526 Cre16.g665400.t1.2 AT4G02840.1 Not available

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0005634 GO:0005732 GO:0006397 GO:0030529 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0005732

small nucleolar ribonucleoprotein complex

Details: 
A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type.
GO Category: 
CC

GO:0006397

mRNA processing

Details: 
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO Category: 
BP

GO:0030529

ribonucleoprotein complex

Details: 
A macromolecular complex containing both protein and RNA molecules.
GO Category: 
CC

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