6684 Tryp_SPc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
6684 chr_7 Tryp_SPc 228249 230683 - Tryp_SPc

Synonyms

NCBI ID Ensembl Genomes exon ID
7446615 Thaps6684.1, Thaps6684.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0037

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0026
 0.39

Most Highly Correlated Transcripts

bd758

(bd758) NA
0.9448

bd1078

(bd1078) NA
0.902

bd950

(bd950) NA
0.9014

bd463

(bd463) Aa_trans superfamily
0.8916

bd1893

(bd1893) NA
0.8853

bd843

(bd843) NA
0.8695

bd439

(bd439) POLBc_alpha
0.8621

36007

Aldolase_II superfamily
0.8602

35531

SET
0.8595

267979

HCO3_cotransp superfamily
0.8557

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Tryp_SPc superfamily Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are... - 173.231 3.27E-49 124 - 436 superfamily 238113
Tryp_SPc superfamily Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are... - 173.231 3.27E-49 124 - 436 superfamily 238113
Tryp_SPc Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are... - 167.47 2.90E-47 124 - 433 multi-dom 214473

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004295 GO:0006508 GO:0004263 GO:0004252 GO:0004289 GO:0008132 GO:0008243 GO:0008991 GO:0016808 -

GO:0004295

NA

Details: 
NA
GO Category: 
NA

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0004263

NA

Details: 
NA
GO Category: 
NA

GO:0004252

serine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
GO Category: 
MF

GO:0004289

NA

Details: 
NA
GO Category: 
NA

GO:0008132

NA

Details: 
NA
GO Category: 
NA

GO:0008243

NA

Details: 
NA
GO Category: 
NA

GO:0008991

NA

Details: 
NA
GO Category: 
NA

GO:0016808

NA

Details: 
NA
GO Category: 
NA

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