6705 UPF0029 superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
6705	chr_7	UPF0029 superfamily	270303	273387	-	UPF0029 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446179	Thaps6705.4, Thaps6705.3, Thaps6705.2, Thaps6705.6, Thaps6705.1, Thaps6705.5

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0473

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0087	0.32	200 240000

Most Highly Correlated Transcripts

bd392 (bd392) DEXDc 0.9534	bd446 (bd446) HrpA 0.9428	bd624 (bd624) Glyco_transf_34 superfamily 0.9201	bd1949 (bd1949) NA 0.9161	bd1465 (bd1465) PKc_like superfamily 0.8956	bd1777 (bd1777) NA 0.8553
bd894 (bd894) Peptidase_M14_like superfamily 0.8438	bd874 (bd874) NA 0.8396	bd687 (bd687) NA 0.833	bd137 (bd137) Motor_domain superfamily 0.8293

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
UPF0029 superfamily		Uncharacterized protein family UPF0029; Uncharacterized protein family UPF0029.	-	69.8104	3.29E-14	208 - 283	superfamily	250442

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_48866	PHATRDRAFT_48866	Not available	Not available	203080	Not available	Not available	342167

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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