6950 prc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
6950 chr_7 prc 887045 889563 - prc

Synonyms

NCBI ID Ensembl Genomes exon ID
7444108 Thaps6950.3, Thaps6950.2, Thaps6950.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0133

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0080
 0.40

Most Highly Correlated Transcripts

4333

hypothetical protein
0.9361

1674

hypothetical protein
0.909

1216

hypothetical protein
0.8991

6378

hypothetical protein
0.8982

12836

EEP superfamily
0.8973

25619

hypothetical protein
0.8966

25162

hypothetical protein
0.8964

8130

hypothetical protein
0.8925

1101

hypothetical protein
0.887

4818

hypothetical protein
0.8858

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41; The C-terminal processing peptidase (... cl02526 149.099 6.86E-41 376 - 559 specific 143476
Peptidase_S41 superfamily C-terminal processing peptidase family S41; Peptidase family S41 (C-terminal processing peptidase... - 149.099 6.86E-41 376 - 559 superfamily 261325
PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in... cl00117 69.1768 3.97E-14 272 - 359 specific 238488
PDZ superfamily PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif).... - 69.1768 3.97E-14 272 - 359 superfamily 260201
prc C-terminal peptidase (prc); A C-terminal peptidase with different substrates in different species... - 189.879 5.80E-54 232 - 561 multi-dom 232883

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 446462 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005515 GO:0006508 GO:0008236 -

GO:0005515

protein binding

Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008236

serine-type peptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
GO Category: 
MF

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