6958 (Tp_HSF_4e) HSF_DNA-bind
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
6958 chr_7 (Tp_HSF_4e) HSF_DNA-bind 908325 909297 - HSF_DNA-bind

Synonyms

NCBI ID Ensembl Genomes exon ID
7444112 Thaps6958.2, Thaps6958.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0361

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0217
 0.33

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9594

bd1807

(bd1807) RRS1 superfamily
0.8724

269238

(Tp_HSF_1.3e) HSF_DNA-bind superfamily
0.8471

5080

hypothetical protein
0.8432

bd1439

(bd1439) ycf35
0.8432

269213

hypothetical protein
0.8407

8521

PseudoU_synth superfamily
0.8376

10740

hypothetical protein
0.8318

bd1806

(bd1806) AAT_I superfamily
0.8316

22731

hypothetical protein
0.8251

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HSF_DNA-bind HSF-type DNA-binding; HSF-type DNA-binding. cl12113 88.3258 3.25E-22 43 - 130 specific 249865
HSF_DNA-bind superfamily HSF-type DNA-binding; HSF-type DNA-binding. - 88.3258 3.25E-22 43 - 130 superfamily 264552

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 303496 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 GO:0003677 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

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