8521 PseudoU_synth superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
8521	chr_10	PseudoU_synth superfamily	796343	797920	+	PseudoU_synth superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446893	Thaps8521.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0328

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0217	0.33	0.94 1200

Most Highly Correlated Transcripts

26366 Mito_carr 0.9155	bd524 (bd524) NA 0.8945	10740 hypothetical protein 0.8898	22731 hypothetical protein 0.8744	269238 (Tp_HSF_1.3e) HSF_DNA-bind superfamily 0.8637	41979 PRK06116 0.8588
4067 hypothetical protein 0.8583	22345 (PYK2) PLN02461 0.8533	5424 hypothetical protein 0.8528	24977 TRAUB superfamily 0.8468

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PseudoU_synth superfamily		Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to...	-	127.975	5.65E-34	211 - 524	superfamily	260207
truA		tRNA pseudouridine synthase A; Validated	-	126.795	1.64E-33	208 - 524	multi-dom	234577

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	232101	107081	241837	Not available	AT5G35400.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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