7094 COG1233
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
7094 chr_7 COG1233 1248839 1250611 + COG1233

Synonyms

NCBI ID Ensembl Genomes exon ID
7447102 Thaps7094.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0071

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0006
 0.41

Most Highly Correlated Transcripts

bd1071

(bd1071) NA
0.8955

bd722

(bd722) NA
0.8278

4108

hypothetical protein
0.8201

bd1659

(bd1659) ZnMc_pappalysin_like
0.7915

bd211

(bd211) Maf_Ham1 superfamily
0.7908

bd1983

(bd1983) RecA-like_NTPases superfamily
0.7749

bd1809

(bd1809) ZnMc_pappalysin_like
0.7608

bd760

(bd760) ZnMc superfamily
0.7585

35404

PTZ00018
0.7402

bd950

(bd950) NA
0.7357

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NAD_binding_8 superfamily NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain. - 232.005 1.69E-68 65 - 575 superfamily 267487
COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and... - 251.97 3.78E-76 63 - 576 multi-dom 224154

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54842 PHATRDRAFT_54842 240069 197380 76074 Cre16.g674950.t1.2 AT1G57770.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016117 GO:0016705 GO:0050660 -

GO:0016117

carotenoid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail.
GO Category: 
BP

GO:0016705

oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
GO Category: 
MF

GO:0050660

flavin adenine dinucleotide binding

Details: 
Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO Category: 
MF

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