7140 Ifi-6-16Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
7140	chr_7	Ifi-6-16	1382782	1384521	-	Ifi-6-16

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450681	Thaps7140.1, Thaps7140.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0129

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0280	0.36	1.3 15

Most Highly Correlated Transcripts

7471 O-FucT_like 0.9021	16613 S_TKc 0.8988	3866 hypothetical protein 0.8987	17582 HAD-SF-IIA-hyp3 0.8976	21877 hypothetical protein 0.8936	22142 hypothetical protein 0.8931
6043 NADB_Rossmann superfamily 0.892	10474 hypothetical protein 0.8914	11977 hypothetical protein 0.891	5066 hypothetical protein 0.8909

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Ifi-6-16 superfamily		Interferon-induced 6-16 family; Interferon-induced 6-16 family.	-	81.604	7.89E-19	412 - 469	superfamily	253581
Ifi-6-16 superfamily		Interferon-induced 6-16 family; Interferon-induced 6-16 family.	-	81.604	7.89E-19	412 - 469	superfamily	253581

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	254447	253442	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0009613 -

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