7506 Uba3_RUB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
7506 chr_8 Uba3_RUB 399138 400818 - Uba3_RUB

Synonyms

NCBI ID Ensembl Genomes exon ID
7445568 Thaps7506.2, Thaps7506.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0208

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0245
 0.28

Most Highly Correlated Transcripts

270222

0.9681

8303

Glyco_trans_1_2
0.9193

268592

VDE superfamily
0.9167

9947

hypothetical protein
0.9132

7597

2A0111
0.9099

7188

PKc_like superfamily
0.8991

34187

(ACAS2) PRK00174
0.8991

34684

Trypsin_2
0.897

5246

hypothetical protein
0.8934

1788

hypothetical protein
0.889

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme... cl17196 495.337 6.18E-174 144 - 440 specific 238765
E1_enzyme_family superfamily Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes... - 495.337 6.18E-174 144 - 440 superfamily 266547
E2_bind E2 binding domain; E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein... cl07434 91.8974 1.69E-22 447 - 529 specific 255059
UAE_UbL superfamily Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; This is the C-terminal domain of ubiquitin-... - 91.8974 1.69E-22 447 - 529 superfamily 263346
ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [... - 154.865 3.50E-43 138 - 311 multi-dom 223552

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_33774 PHATRDRAFT_33774 275518 204451 428127 Cre12.g491500.t1.2 AT5G19180.1 348923

KEGG

KEGG description KEGG Pathway
Ubiquitin mediated proteolysis map04120

GO Terms

GO:0004839 GO:0006464 GO:0006512 GO:0003824 GO:0004842 -

GO:0004839

ubiquitin activating enzyme activity

Details: 
Catalysis of the reaction: a protein L-lysine + a ubiquitin + ATP = a protein-N-ubiquityl-lysine + AMP + diphosphate. This reaction is the activation of the C-terminal carboxyl group of ubiquitin by the formation of a high-energy thiolester bond in an ATP-dependent manner.
GO Category: 
MF

GO:0006464

cellular protein modification process

Details: 
The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
GO Category: 
BP

GO:0006512

NA

Details: 
NA
GO Category: 
NA

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

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