7530 COG3899Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
7530	chr_8	COG3899	455704	460257	+	COG3899

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450148	Thaps7530.3, Thaps7530.5, Thaps7530.2, Thaps7530.1, Thaps7530.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0267

Most Highly Correlated Transcripts

bd935 (bd935) TFIIS_I 0.898	bd763 (bd763) NA 0.855	21178 hypothetical protein 0.8135	24665 hypothetical protein 0.8108	11941 hypothetical protein 0.8082	25321 hypothetical protein 0.8029
24483 hypothetical protein 0.8004	23332 COG0790 0.7997	28816 (RPC1) PRK08566 0.7992	21190 SAC3_GANP 0.7982

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_16		AAA ATPase domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	cl18944	82.8957	8.34E-18	420 - 620	specific	257559
AAA superfamily		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	82.8957	8.34E-18	420 - 620	superfamily	267297
COG3899		Predicted ATPase [General function prediction only]	-	258.482	9.09E-72	421 - 1214	multi-dom	226415

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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