7794 UPF0054Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
7794	chr_8	UPF0054	1142826	1143989	+	UPF0054

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452371	Thaps7794.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0249

Most Highly Correlated Transcripts

268443 SAICAR_synt_Sc 0.9088	36007 Aldolase_II superfamily 0.887	31007 DsbA_FrnE 0.8859	19158 GRX_PICOT_like 0.8809	1095 protease_HslV 0.8807	31412 NAD_bind_amino_acid_DH superfamily 0.8781
264598 AAA 0.8763	32782 MPN superfamily 0.876	3804 hypothetical protein 0.8752	261040 RsuA 0.8747

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
UPF0054		Uncharacterized protein family UPF0054; Uncharacterized protein family UPF0054.	cl00402	82.3153	4.16E-19	180 - 367	specific	251107
UPF0054 superfamily		Uncharacterized protein family UPF0054; Uncharacterized protein family UPF0054.	-	82.3153	4.16E-19	180 - 367	superfamily	260407

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_31663	PHATRDRAFT_31663	153089	150691	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005554 -

Add comment

Log in to post comments