7890 HORMAThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
7890	chr_9	HORMA	185150	186334	+	HORMA

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445001	Thaps7890.2, Thaps7890.4, Thaps7890.3, Thaps7890.5, Thaps7890.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0215

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0086	0.47	0.013 230

Most Highly Correlated Transcripts

bd760 (bd760) ZnMc superfamily 0.9074	bd1173 (bd1173) S_TKc 0.9041	14875 GT_GPT_euk 0.8702	6402 hypothetical protein 0.8651	7304 hypothetical protein 0.8577	bd1659 (bd1659) ZnMc_pappalysin_like 0.8565
bd1081 (bd1081) NA 0.8529	bd950 (bd950) NA 0.8523	bd765 (bd765) NA 0.8485	7926 hypothetical protein 0.8465

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HORMA superfamily		HORMA domain; The HORMA (for Hop1p, Rev7p and MAD2) domain has been suggested to recognize...	-	168.273	7.67E-52	50 - 218	superfamily	251210
HORMA superfamily		HORMA domain; The HORMA (for Hop1p, Rev7p and MAD2) domain has been suggested to recognize...	-	168.273	7.67E-52	50 - 218	superfamily	251210

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_51024	PHATRDRAFT_51024	166954	253664	69270	Cre08.g380400.t1.2	AT3G25980.1	285513

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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