7964 (PSB4) proteasome_beta_type_2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
7964 chr_9 (PSB4) proteasome_beta_type_2 382974 383818 + proteasome_beta_type_2

Synonyms

NCBI ID Ensembl Genomes exon ID
7449308 Thaps7964.2, Thaps7964.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0199

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0035
 0.44

Most Highly Correlated Transcripts

30971

MIR
0.8796

269624

TIM_phosphate_binding superfamily
0.8781

21288

dsDNA_bind
0.8779

33649

(PSB6) proteasome_beta_type_6
0.8685

37118

FeThRed_B
0.865

37934

GRX_PICOT_like
0.8647

1428

hypothetical protein
0.8611

25040

NA
0.8587

35136

NA
0.8586

26868

(PSA3) proteasome_alpha_type_3
0.8552

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the... cl00467 244.417 9.90E-82 28 - 208 specific 239727
Ntn_hydrolase superfamily The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are... - 244.417 9.90E-82 28 - 208 superfamily 260443
PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover,... - 121.251 2.08E-33 28 - 204 multi-dom 223711

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_19341 PHATRDRAFT_19341 205878 253415 361941 Cre14.g610950.t1.2 AT4G14800.1 288888

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0004298 GO:0005839 GO:0006511 GO:0004299 -

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0005839

proteasome core complex

Details: 
A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
GO Category: 
CC

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

GO:0004299

NA

Details: 
NA
GO Category: 
NA

Add comment

Log in to post comments