802 (RL5) PTZ00069
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
802 chr_18 (RL5) PTZ00069 286492 287613 + PTZ00069
NCBI ID Ensembl Genomes exon ID
7442956 Thaps802.2, Thaps802.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0047
Normalized Mean Residue
Thaps_bicluster_0227
0.33
(RS3A) Ribosomal_S3Ae
0.924
WD40
0.9017
(RL18) Ribosomal_L18e superfamily
0.9016
(RL27A) Ribosomal_L18e superfamily
0.9011
(RL8) PTZ00180
0.8944
(RS23) Ribosomal_S23
0.8942
(RL23a) PTZ00191
0.8895
(RL11A) PTZ00156
0.8852
(RS11) Ribosomal_S17 superfamily
0.885
(RS15A) PTZ00158
0.8849
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the... cl00379 91.8327 2.96E-23 39 - 180 specific 238246
Ribosomal_L18_L5e superfamily Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the... - 91.8327 2.96E-23 39 - 180 superfamily 260392
Ribosomal_L18_c superfamily Ribosomal L18 C-terminal region; This domain is the C-terminal end of ribosomal L18/L5 proteins. - 128.051 9.46E-37 201 - 292 superfamily 258399
Ribosomal_L18_c superfamily Ribosomal L18 C-terminal region; This domain is the C-terminal end of ribosomal L18/L5 proteins. - 128.051 9.46E-37 201 - 292 superfamily 258399
PTZ00069 60S ribosomal protein L5; Provisional - 408.303 5.35E-143 1 - 303 multi-dom 240254
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_31919 PHATRDRAFT_31919 215259 294204 434648 Cre14.g621450.t1.2 AT3G25520.1 286118
KEGG description KEGG Pathway
Ribosome map03010
GO:0003735 GO:0005622 GO:0005840 GO:0006412 GO:0008097 -

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

5S rRNA binding

Details: 
Interacting selectively and non-covalently with 5S ribosomal RNA, the smallest RNA constituent of a ribosome.
GO Category: 
MF
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