26063 WD40
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
26063 chr_1 WD40 882087 883104 + WD40

Synonyms

NCBI ID Ensembl Genomes exon ID
7445619 Thaps26063.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0047

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0227
 0.33

Most Highly Correlated Transcripts

39735

(RL27A) Ribosomal_L18e superfamily
0.9403

39282

(RL15) PTZ00026
0.9271

41319

(RL18) Ribosomal_L18e superfamily
0.9233

269235

(RL3) PTZ00103
0.9148

802

(RL5) PTZ00069
0.9017

264201

(RL8) PTZ00180
0.8974

26046

(RS3A) Ribosomal_S3Ae
0.8865

5293

PRK00772
0.8777

33241

(RL17) Ribosomal_L22
0.8756

28425

(RS19) Ribosomal_S19e
0.8704

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 262.271 9.95E-86 7 - 321 superfamily 238121
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 262.271 9.95E-86 7 - 321 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 130.979 1.96E-34 8 - 323 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_28694 PHATRDRAFT_28694 189250 300319 77411 Cre06.g278222.t1.1 AT3G18130.1 355000

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003847 -

GO:0003847

1-alkyl-2-acetylglycerophosphocholine esterase activity

Details: 
Catalysis of the reaction: 2-acetyl-1-alkyl-sn-glycero-3-phosphocholine + H2O = 1-alkyl-sn-glycero-3-phosphocholine + acetate.
GO Category: 
MF

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