8433 TFSII
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
8433 chr_10 TFSII 578915 580384 - TFSII

Synonyms

NCBI ID Ensembl Genomes exon ID
7445900 Thaps8433.2, Thaps8433.3, Thaps8433.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0272

Most Highly Correlated Transcripts

9514

hypothetical protein
0.8782

13448

Sec1
0.875

4898

hypothetical protein
0.8747

8937

hypothetical protein
0.8706

262616

(MYB22)
0.861

32211

G10
0.859

26743

IF-2B
0.8532

21910

hypothetical protein
0.8517

10142

Got1 superfamily
0.85

bd686

(bd686) Glyco_transf_22 superfamily
0.8475

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Zn-ribbon_TFIIS domain III/zinc ribbon domain of Transcription Factor IIS; TFIIS is a zinc-containing transcription... cl02609 64.9346 1.19E-13 354 - 394 specific 259796
Zn-ribbon superfamily C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit; The... - 64.9346 1.19E-13 354 - 394 superfamily 261369
TFIIS_M Transcription factor S-II (TFIIS), central domain; Transcription elongation by RNA polymerase II is... cl02637 80.3612 1.78E-18 225 - 317 specific 254240
TFIIS_M superfamily Transcription factor S-II (TFIIS), central domain; Transcription elongation by RNA polymerase II is... - 80.3612 1.78E-18 225 - 317 superfamily 261385
TFSII transcription elongation factor S-II; This model represents eukaryotic transcription elongation... - 136.507 6.42E-37 104 - 393 multi-dom 233390

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_36634 PHATRDRAFT_36634 241140 242814 Not available Cre09.g386350.t1.1 AT2G38560.1 482367

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0003700 GO:0006354 GO:0006355 GO:0006350 GO:0006952 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0006354

DNA-templated transcription, elongation

Details: 
The extension of an RNA molecule after transcription initiation and promoter clearance at a DNA-dependent RNA polymerase promoter by the addition of ribonucleotides catalyzed by an RNA polymerase.
GO Category: 
BP

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0006350

NA

Details: 
NA
GO Category: 
NA

GO:0006952

defense response

Details: 
Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
GO Category: 
BP

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