26743 IF-2B
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
26743 chr_1 IF-2B 1893793 1895306 + IF-2B

Synonyms

NCBI ID Ensembl Genomes exon ID
7443140 Thaps26743.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0270

Most Highly Correlated Transcripts

12836

EEP superfamily
0.9145

35095

TPR
0.9029

13448

Sec1
0.8948

269819

GT1_ALG11_like
0.8924

6459

Spc97_Spc98
0.8913

9108

PRP3 superfamily
0.8908

269169

Beach
0.8859

4287

PBPb
0.8819

22303

hypothetical protein
0.8793

21700

hypothetical protein
0.8788

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
IF-2B Initiation factor 2 subunit family; This family includes initiation factor 2B alpha, beta and delta... cl00348 237.191 3.15E-75 56 - 364 specific 250290
IF-2B superfamily Initiation factor 2 subunit family; This family includes initiation factor 2B alpha, beta and delta... - 237.191 3.15E-75 56 - 364 superfamily 260372

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_14255 PHATRDRAFT_14255 195883 323720 100973 Cre12.g558650.t1.1 AT5G38640.1 319805

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0003743 GO:0005525 GO:0005851 GO:0006413 -

GO:0003743

translation initiation factor activity

Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO Category: 
MF

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0005851

eukaryotic translation initiation factor 2B complex

Details: 
A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon.
GO Category: 
CC

GO:0006413

translational initiation

Details: 
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
GO Category: 
BP

Add comment

Log in to post comments