8537 S2P-M50_like_2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
8537 chr_10 S2P-M50_like_2 841575 843444 - S2P-M50_like_2

Synonyms

NCBI ID Ensembl Genomes exon ID
7446902 Thaps8537.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0025

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0042
 0.43

Most Highly Correlated Transcripts

bd719

(bd719) NA
0.9077

bd687

(bd687) NA
0.8927

bd1765

(bd1765) NA
0.8868

bd1160

(bd1160) Chloroa_b-bind superfamily
0.8741

bd1820

(bd1820) Fasciclin
0.8718

bd1221

(bd1221) recQ_fam
0.8678

bd624

(bd624) Glyco_transf_34 superfamily
0.8674

bd1078

(bd1078) NA
0.8655

269655

PRK09330
0.858

bd258

(bd258) HU
0.8539

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which... cl10020 101.538 1.20E-24 338 - 579 specific 100081
S2P-M50 superfamily Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane... - 101.538 1.20E-24 338 - 579 superfamily 245232

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_33462 PHATR_33462 136808 283725 Not available Cre01.g049350.t1.1 AT5G35220.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006508 GO:0008237 GO:0008270 GO:0004222 -

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008237

metallopeptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

GO:0004222

metalloendopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

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