8959 AAA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
8959 chr_12 AAA 145637 147091 - AAA

Synonyms

NCBI ID Ensembl Genomes exon ID
7449368 Thaps8959.2, Thaps8959.1, Thaps8959.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0012

Most Highly Correlated Transcripts

bd706

(bd706) NA
0.9263

33353

TRX_family
0.8906

26991

GRX_GRXh_1_2_like
0.8793

25829

hypothetical protein
0.8787

4603

COPIIcoated_ERV superfamily
0.8782

38331

YIP1 superfamily
0.8762

1520

hypothetical protein
0.8759

41655

Chloroa_b-bind
0.8745

261400

NA
0.8723

38285

(PMSR1) MsrA
0.8697

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 98.3723 1.33E-24 158 - 296 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 98.3723 1.33E-24 158 - 296 superfamily 267297
MIT MIT (microtubule interacting and transport) domain; The MIT domain forms an asymmetric three-helix... cl00299 79.5675 1.46E-18 5 - 73 specific 146707
MIT superfamily MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is... - 79.5675 1.46E-18 5 - 73 superfamily 260336
Vps4_C superfamily Vps4 C terminal oligomerization domain; This domain is found at the C terminal of ATPase proteins... - 64.1989 3.85E-13 364 - 419 superfamily 204202
AAA ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety... - 83.9621 1.96E-19 161 - 298 multi-dom 214640

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 261371 24016 Not available Cre02.g079300.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Endocytosis map04144

GO Terms

GO:0000166 GO:0017111 GO:0005524 GO:0008568 -

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008568

microtubule-severing ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate. Catalysis of the severing of a microtubule at a specific spot along its length, coupled to the hydrolysis of ATP.
GO Category: 
MF

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