900 POP1 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
900 chr_1 POP1 superfamily 121529 124039 + POP1 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7449165 Thaps900.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0244

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0079
 0.38

Most Highly Correlated Transcripts

263650

NAD_binding_8 superfamily
0.902

bd661

(bd661) NA
0.8867

5540

hypothetical protein
0.8849

21176

FMO-like
0.8779

31928

ATM1
0.8724

7683

DUF3395 superfamily
0.8671

24598

Peptidase_C19
0.8614

23199

WD40 superfamily
0.8605

5007

hypothetical protein
0.8602

22302

Peptidase_C19 superfamily
0.8586

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
POP1 superfamily Ribonucleases P/MRP protein subunit POP1; This family represents a conserved region approximately... - 62.3239 3.06E-11 132 - 285 superfamily 254000

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 245040 291322 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0001682 GO:0004526 -

GO:0001682

tRNA 5'-leader removal

Details: 
Generation of the mature 5'-end of the tRNA, usually via an endonucleolytic cleavage by RNase P.
GO Category: 
BP

GO:0004526

ribonuclease P activity

Details: 
Catalysis of the endonucleolytic cleavage of RNA, removing 5' extra nucleotides from tRNA precursor.
GO Category: 
MF

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