9506 AAA_12Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
9506	chr_13	AAA_12	594333	598329	+	AAA_12

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446946	Thaps9506.3, Thaps9506.2, Thaps9506.7, Thaps9506.5, Thaps9506.6, Thaps9506.1, Thaps9506.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0153

Most Highly Correlated Transcripts

bd392 (bd392) DEXDc 0.9641	bd1949 (bd1949) NA 0.9454	bd446 (bd446) HrpA 0.939	bd624 (bd624) Glyco_transf_34 superfamily 0.8824	bd1777 (bd1777) NA 0.8793	bd874 (bd874) NA 0.87
12836 EEP superfamily 0.8647	24100 hypothetical protein 0.8481	23457 DnaJ 0.8378	269063 ArsB_NhaD_permease superfamily 0.8283

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_12 superfamily		AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	-	223.194	2.15E-66	913 - 1115	superfamily	257490
AAA_12 superfamily		AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	-	223.194	2.15E-66	913 - 1115	superfamily	257490
AAA_11		AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	-	136.217	6.02E-36	562 - 913	multi-dom	257489

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	98205	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0000166 GO:0017111 -

Add comment

Log in to post comments