9851 Smc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9851 chr_14 Smc 533345 537185 - Smc

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0216

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0164
 0.39

Most Highly Correlated Transcripts

1743

Smc
0.8885

268078

MFS_1
0.8855

23033

NADB_Rossmann superfamily
0.8829

1217

(Tp_Myb1R2) SANT_TRF
0.8771

8748

Cnd1
0.8716

6957

hypothetical protein
0.8692

18303

Ras_like_GTPase superfamily
0.8656

4278

hypothetical protein
0.862

269735

hypothetical protein
0.8615

20587

hypothetical protein
0.8588

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_SMC5_euk ATP-binding cassette domain of eukaryotic SMC5 proteins; The structural maintenance of chromosomes... cl17201 162.765 5.57E-45 25 - 196 specific 213244
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 162.765 5.57E-45 25 - 196 superfamily 266551
ABC_SMC5_euk ATP-binding cassette domain of eukaryotic SMC5 proteins; The structural maintenance of chromosomes... cl17201 162.765 5.57E-45 25 - 196 specific 213244
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 162.765 5.57E-45 25 - 196 superfamily 266551
Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] - 191.466 7.87E-50 27 - 1080 multi-dom 224117

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54192 PHATRDRAFT_54192 193562 Not available 469686 Cre10.g440200.t1.1 AT5G15920.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0005694 GO:0051276 GO:0008570 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0005694

chromosome

Details: 
A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
GO Category: 
CC

GO:0051276

chromosome organization

Details: 
A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information.
GO Category: 
BP

GO:0008570

NA

Details: 
NA
GO Category: 
NA

Add comment

Log in to post comments