bd1267 (bd1267) rpoB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
bd1267 bd_26x41 (bd1267) rpoB 26138 30298 + rpoB

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0063

Most Highly Correlated Transcripts

ThpsCp034

(rpoB) RNA polymerase beta subunit
1

ThpsCp025

(rpl20) ribosomal protein L20
0.9569

ThpsCp081

(secA) preprotein translocase subunit SecA
0.9394

ThpsCp135

(secA) preprotein translocase subunit SecA
0.9394

ThpsCp080

(rpl27) ribosomal protein L27
0.9342

ThpsCp136

(rpl27) ribosomal protein L27
0.9342

bd997

(bd997) rpoC1
0.9314

ThpsCp033

(rpoC1) RNA polymerase beta' subunit
0.9314

ThpsCp111

(rpl18) ribosomal protein L18
0.9186

ThpsCp023

(ycf42) putative peroxiredoxin ycf42
0.9164

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNA_pol_B_RPB2 superfamily RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 93.0167 2.67E-19 10 - 383 superfamily 238353
RNA_pol_B_RPB2 superfamily RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 93.0167 2.67E-19 10 - 383 superfamily 238353
RNA_pol_Rpb2_45 superfamily RNA polymerase beta subunit external 1 domain; RNA polymerases catalyse the DNA-dependent... - 94.4151 9.32E-23 717 - 784 superfamily 255954
RNA_pol_Rpb2_45 superfamily RNA polymerase beta subunit external 1 domain; RNA polymerases catalyse the DNA-dependent... - 94.4151 9.32E-23 717 - 784 superfamily 255954
RNA_pol_Rpb2_1 superfamily RNA polymerase beta subunit; RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 98.5861 6.85E-22 9 - 131 superfamily 267831
RNA_pol_B_RPB2 superfamily RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 93.0167 2.67E-19 10 - 383 superfamily 238353
rpoB RNA polymerase beta subunit; Provisional - 1462.23 0 271 - 1345 multi-dom 214397

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 290706 Not available Not available ATCG00190.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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