bd1545 (bd1545) psbCThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
bd1545	bd_26x41	(bd1545) psbC	10631	13156	-	psbC

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0029

Most Highly Correlated Transcripts

ThpsCp054 (psbC) photosystem II 44 kDa protein 1	ThpsCr002 (rnl) 0.9441	ThpsCr005 (rnl') 0.9441	bd1287 (bd1287) PRK09281 0.9051	ThpsCp017 (atpA) ATP synthase CF1 alpha subunit 0.9051	ThpsCt014 (trnE(uuc)) 0.8928
ThpsCp085 (psbA) photosystem II protein D1 0.8919	ThpsCp131 (psbA) photosystem II protein D1 0.8919	ThpsCp126 (thiG) thiamin biosynthesis protein G 0.8811	ThpsCp053 (psbD) photosystem II protein D2 0.8808

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
psbC		photosystem II 44 kDa protein	cl08223	925.665	0	1 - 471	specific	214343
PSII superfamily		Photosystem II protein; Photosystem II protein.	-	925.665	0	1 - 471	superfamily	263539

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	298352	Not available	Not available	ATCG00280.1	Not available

KEGG

KEGG description	KEGG Pathway
Metabolic pathways	map01100

GO Terms

Not available -

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