bd1287 (bd1287) PRK09281
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
bd1287 bd_26x41 (bd1287) PRK09281 47911 49422 - PRK09281

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0065

Most Highly Correlated Transcripts

ThpsCp017

(atpA) ATP synthase CF1 alpha subunit
1

ThpsCp024

(rpl35) ribosomal protein L35
0.924

bd1013

(bd1013) PRX_Typ2cys
0.9238

ThpsCt018

(trnP(ugg))
0.9231

ThpsCt031

(trnP(ugg)')
0.9231

ThpsCt011

(trnY(gua))
0.9211

ThpsCp053

(psbD) photosystem II protein D2
0.9206

ThpsCp126

(thiG) thiamin biosynthesis protein G
0.9095

bd1545

(bd1545) psbC
0.9051

ThpsCp054

(psbC) photosystem II 44 kDa protein
0.9051

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes,... cl17233 581.143 0 95 - 368 specific 238552
RecA-like_NTPases superfamily RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and... - 581.143 0 95 - 368 superfamily 266574
ATP-synt_ab_C superfamily ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta chain, C terminal domain. - 99.269 6.41E-25 377 - 469 superfamily 249758
ATP-synt_ab_C superfamily ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta chain, C terminal domain. - 99.269 6.41E-25 377 - 469 superfamily 249758
ATP-synt_ab_N superfamily ATP synthase alpha/beta family, beta-barrel domain; This family includes the ATP synthase alpha and... - 72.5589 7.28E-16 26 - 93 superfamily 251583
ATP-synt_ab_N superfamily ATP synthase alpha/beta family, beta-barrel domain; This family includes the ATP synthase alpha and... - 72.5589 7.28E-16 26 - 93 superfamily 251583
PRK09281 F0F1 ATP synthase subunit alpha; Validated - 998.425 0 3 - 502 multi-dom 236448

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_14618 PHATRDRAFT_14618 210953 Not available 433142 Cre02.g116750.t1.1 Not available 348089

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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